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Associate Director Peptide Jobs (NOW HIRING)

Regeneron Pharmaceuticals, Inc

NY · On-site

$25.75 - $34/hr

Associate Director (Peptidomimetics), R&D Chemistry We are currently seeking an established leader ... Troubleshoot and optimize peptide potency and stability using standard peptide‑based principles ...

Regeneron Pharmaceuticals, Inc

NY · On-site

$176K - $287K/yr

Regeneron Pharmaceuticals, Inc is seeking an Associate Director for their R&D Chemistry team in ... D. in peptide or synthetic organic chemistry, with a minimum of 10 years of relevant experience.

Travere Therapeutics

## Associate Director, Technical Operations (Analytical Development-Biologics)Applylocations: San ... Direct knowledge of HPLC, CE-SDS, cIEF, potency bioassays, peptide map, ELISA, LC-MS and other ...

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Associate Director Peptide information

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$30.5K

$102.7K

$173K

How much do associate director peptide jobs pay per year?

As of Sep 13, 2026, the average yearly pay for associate director peptide in the United States is $102,728.00, according to ZipRecruiter salary data. Most workers in this role earn between $70,000.00 and $141,000.00 per year, depending on experience, location, and employer.

What does an associate director peptide do?

An Associate Director Peptide is a senior leader responsible for overseeing peptide research, development, and production in pharmaceutical or biotechnology companies. They manage teams of scientists, guide project strategies, and ensure that peptide-related products meet regulatory standards. This role often involves collaborating with cross-functional teams, setting research priorities, and supporting business development efforts related to peptide therapeutics. Associate Directors also stay up to date with industry trends and scientific advancements to drive innovation within their organization.

What are the key skills and qualifications needed to thrive as an associate director peptide?

To thrive as an Associate Director, Peptide, you need advanced knowledge in peptide chemistry, drug development, and project management, typically supported by a PhD or master’s degree in a relevant scientific field. Familiarity with laboratory automation, analytical tools like HPLC/MS, and regulatory compliance systems is often required, along with experience in managing cross-functional teams. Strong leadership, strategic thinking, and excellent communication skills help drive innovation and align diverse teams toward project goals. These skills ensure efficient development of peptide therapeutics, regulatory adherence, and successful project outcomes in a competitive biopharmaceutical environment.

What are some common challenges faced by an associate director peptide and how can they be addressed?

As an Associate Director in Peptide research, one common challenge is balancing strategic oversight with the hands-on scientific guidance required for complex projects. This role often involves coordinating multidisciplinary teams, managing tight timelines, and navigating evolving regulatory requirements. Effective communication, strong project management skills, and staying current with industry advancements are essential for addressing these challenges. Building collaborative relationships with both internal stakeholders and external partners can also help streamline processes and ensure smooth project execution.

What are popular job titles related to Associate Director Peptide jobs?

For Associate Director Peptide jobs, the most frequently searched job titles are:

Infographic showing various Associate Director Peptide job openings in the United States as of August 2026, with employment types broken down into 1% As Needed, 69% Full Time, 28% Part Time, 1% Temporary, and 1% Contract. Highlights an 96% Physical, 1% Hybrid, and 3% Remote job distribution, with an average salary of $102,728 per year, or $49.4 per hour.

Associate Director, Clinical Operations

Newark, CA • On-site

Protagonist Therapeutics Inc.
Biotechnology Research and Development • 51 - 200 employees
Learn more about Protagonist Therapeutics Inc.external

$185K - $205K/yr

Full-time

Re-posted 29 days ago

Job description

Associate Director, Clinical Operations
Skills & Attributes
Excellent organizational and leadership skills with very strong experience in executing Phase 1-3 global clinical trials. Experience leading a team managing international trials using CROs from set-up through to close out. Global clinical research expertise with excellent line and matrix management skills. Excellent teamwork, communication and interpersonal skills with a demonstrated ability to effectively develop talent. Highly developed critical thinking, prioritization and risk management skills to drive successful execution of trials. Strong knowledge of GCP and related international regulations. Excellent written and spoken English. Ability to work in a fast-paced dynamic environment.
Experience Required
5+ years global experience, with 5+ years at Senior Manager level or above in a Biotech/Pharma/CRO. Proven track record of effective leadership in a multi-disciplinary team.
Education Required
/Bachelor's Degree
Travel Required
Yes (up to 15%)
Job Summary
The Associate Director is accountable for the day-to-day management of the assigned clinical operations team. Provide strategic direction and leadership for the execution of trials. Accountable to ensure the delivery of appropriately skilled resources so that trials are delivered according to corporate objectives. Responsible for the delivery of clinical study milestones. Provide hands-on operations as necessary. Overseeing vendor activities with appropriate risk mitigations and contingency planning. Contribute strategic clinical operations input to the clinical development of Protagonist assets.
Core Responsibilities and skills
  • Primary operational leader of the clinical program implementation.
  • Participate in resource allocation, prioritization and budgeting to ensure department goals and milestones are aligned and tracking to corporate objectives. Line management responsibilities include hiring talent, performance development and mentorship.
  • Ensure ongoing strong vendor interactions and collaborations, including hands-on interactions and management.
  • Develop and manage integrated study timelines and leads study strategy meetings to review trial status/progress
  • Provide input on strategy in the development of realistic project milestones and deliverables. Apply appropriate project management tools and processes.
  • Lead ongoing risk assessments with accompanying mitigation plans and contingency plans. Strong abilities to problem-solve and diagnose the root causes and implement the appropriate corrective actions
  • Provide input to the development and review of study and overall clinical program budgets. Take corrective measures as necessary to keep project(s) in line within agreed timelines, quality, budget and performance metrics. Assess the impact of project scope changes to understand the implications on agreed plans and budgets.
  • Help develop site recruitment, enrollment and engagement strategies. Present overall scorecard and analysis to senior management.
  • Manage interdisciplinary activities to ensure clinical operations team collaborates effectively to set achievable goals, milestones and timelines. Establish strong cross-functional relationships and manage cross functional resources and study deliverables.
  • Identify and implement best practices and leverage lessons learnt and process improvements. Collaborate with Clinical Quality Assurance to develop a strategic plan for CRO and vendor audits. Proactively seek out, recommend and execute process improvements
  • Excellent oral and written communication skills with the ability to communicate clearly, succinctly and credibly to all organizational levels. A proven ability to anticipate and respond quickly to key emerging information.
  • Maintain oversight and contribute to the development of the department's standard operating procedures (SOPs). Ensure plans are developed in accordance with SOPs, and there is compliance with all controlled document requirements and other requirements to help guarantee quality deliverables.
  • Maintain knowledge of product areas, current trends, and literature to help ensure compliance
  • Drive excellence in the overall clinical operational activities across multiple clinical trials. Creative, dynamic and results-oriented. Act with integrity and respect at all times
  • Proficient in the use of computer and software systems (e.g., Excel, MS Project).
  • Perform other duties, initiatives and assignments as requested for the overall performance of the function and the company.

The base pay range for this position at commencement of employment is expected to be between $185K and $205K / year; however, base pay offered may vary depending on multiple individualized factors, including market location, job-related knowledge, skills, and experience.
Protagonist Therapeutics is a discovery through late-stage development biopharmaceutical company. The Company's proprietary peptide technology platform enables de novo discovery of peptide therapeutics. Two novel peptides derived from Protagonist's proprietary discovery platform are at or near commercialization. ICOTYDE™ (icotrokinra) is approved in the U.S. for the treatment of moderate-to-severe plaque psoriasis in adults and pediatric patients 12 years of age and older who weigh at least 40 kg who are candidates for systemic therapy or phototherapy. ICOTYDE is the first and only targeted oral peptide that precisely blocks the Interleukin-23 receptor (IL-23R) licensed to Janssen Biotech, Inc.,a Johnson & Johnson company. ICOTYDE was jointly discovered by Protagonist and Johnson & Johnson scientists, with Protagonist having primary responsibility for the development of ICOTYDE through Phase 1, and Johnson & Johnson assuming responsibility for further development and commercialization. An NDA for rusfertide, a first-in-class hepcidin mimetic peptide that is being co-developed with Takeda Pharmaceuticals pursuant to a worldwide license and collaboration agreement entered in 2024, is under priority review with the FDA. Protagonist holds an option to co-commercialize rusfertide in the U.S. through a 50/50 profit and loss share structure or can opt-out of this structure. The Company also has a number of preclinical stage drug discovery programs addressing clinically and commercially validated targets including an oral IL-17 peptide antagonist, obesity dual and triple agonists, an oral hepcidin functional mimetic, and the recently announced IL-4 and amylin programs.
More information on Protagonist, its pipeline drug candidates, and clinical studies can be found on the Company's website at https://www.protagonist-inc.com.

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