At least 2-3 years experience developing production level code and a strong foundation in Python including package development and unit testing
Experienced in creating and deploying Docker images and working on AWS.
Convert serial computational pipelines into robust distributed pipelines using CWL in Seven Bridges platform and in AWS, as well as using NextFlow in AWS
Develop cloud-based data infrastructure capabilities in AWS. For example, design workstreams leveraging S3, EC2, AWS Batch, Lambda, and DynamoDB
Convert development code into productionized bioinformatics pipelines with a focus on optimization, distributed processing, modularity, and parameterization
Create unittesting frameworks for essential pipelines and code development
Create tools for automatically moving data to AWS and Seven Bridges, deploying specific pipelines, organizing data tagged with metadata to make data FAIR
Additional Preferred Skills:
General knowledge of methods used in biotechnology, next generation sequencing, and developing bioinformatics pipelines
At least 1 year experience developing pipelines using a workflow language such as CWL, nextflow, WDL, or snakemake
Experience with Ansible to automate deployment and configuration
Note: If interested please send your updated resume to email@example.com and include your salary requirement along with your contact details with a suitable time when we can reach you. If you know of anyone in your sphere of contacts, who would be a perfect match for this job then, we would appreciate if you can forward this posting to them with a copy to us.